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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g063290.1 | ||||||||
Common Name | MTR_7g063290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 488aa MW: 54862 Da PI: 6.9693 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.3 | 1.1e-10 | 107 | 147 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++ +++G+++W+ +a+++g ++ + c ++++ Medtr7g063290.1 107 WNADEEILLLEGLEMYGMNNWAEVAEHVG-TKNKEACTEHYR 147 *****************************.**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00291 | 2.2E-11 | 43 | 87 | IPR000433 | Zinc finger, ZZ-type |
PROSITE profile | PS50135 | 11.364 | 43 | 90 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 2.0E-14 | 44 | 110 | No hit | No description |
Pfam | PF00569 | 4.3E-10 | 44 | 86 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02335 | 9.15E-25 | 47 | 95 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 49 | 76 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 2.17E-11 | 100 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 18.92 | 102 | 154 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-9 | 103 | 152 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-9 | 106 | 147 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-7 | 107 | 147 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-4 | 122 | 147 | No hit | No description |
PROSITE profile | PS50934 | 8.77 | 401 | 487 | IPR007526 | SWIRM domain |
SuperFamily | SSF46689 | 1.2E-15 | 404 | 484 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MEVYPKKKAS IEALKELSRK NKNAASGNNS ESGAAGQGAG EAKRHLYHCN YCNFDITGKI 60 RIKCVVCSDF DLCVECFSVG AELTPHKSNH AYRVMDNLSF PLICPDWNAD EEILLLEGLE 120 MYGMNNWAEV AEHVGTKNKE ACTEHYRIVY LDSPCFPLPD MSHVVGKSRE ELLAMGKEQA 180 DNKKGSDSGL SVKAHAAART NQKASSRGRE KDSSRNSGGN KPKSSRNDSP SLVEASGYNP 240 KRQEFDIEYD NDAEKLLADM EFNDSDTADE IEIKLRMIRI YNRRLDERER RKKFILERNL 300 LYPNPFEKDL TPEEKAICRQ YDVFMHFHTK EAHEELLTTV ISEHRLKKKI QELKEARAAG 360 KRRRTEAEES ALRARESAYV VPRNRGVPNA LMSPDSADPR PAGRATSSSV NEMDATGANL 420 LSEAEKRLCC ELGLPPTVYL KMQEDLSIQM IAGNVSSKSD AHRMFQMDTM KVDMVYDMLI 480 KKGFGSP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 346 | 363 | KKKIQELKEARAAGKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013448949.1 | 0.0 | transcriptional adapter ADA2a | ||||
Swissprot | Q9ATB4 | 0.0 | TAD2B_ARATH; Transcriptional adapter ADA2b | ||||
TrEMBL | A0A072U0P5 | 0.0 | A0A072U0P5_MEDTR; Transcriptional adapter ADA2a | ||||
STRING | GLYMA15G12400.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1537 | 17 | 26 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g063290.1 |
Entrez Gene | 25498564 |
Publications ? help Back to Top | |||
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